Taxonomic reassessment of the Little pocket mouse, Perognathus longimembris (Rodentia, Heteromyidae) of southern California and northern Baja California

Authors

Keywords:

Biogeography, colorimetrics, geomorphometrics, management, taxonomy, aestivus, arenicola, bangsi, brevinasus, bombycinus, cantwelli, internationalis, pacificus.

Abstract

The Little pocket mouse (Perognathus longimembris) encompasses 15 to 16 currently recognized subspecies, six of which are restricted to southern California and adjacent northern Baja California. Using cranial geomorphometric shape parameters and dorsal color variables we delineate six regional groups of populations from this area that we recognize as valid, but these differ in name combination and geographic range from the current taxonomy. We resurrect two names from their current placement in synonymies, synonymize two currently recognized subspecies, and we reassign a third. Importantly, we restrict the U. S. Federally endangered Pacific pocket mouse (P. l. pacificus Mearns) to the vicinity of its type locality at the mouth of the Tijuana River in the southwestern corner of San Diego County and resurrect P. l. cantwelli von Bloeker for the other two population segments along the coast, those that span the northwestern corner of San Diego County and adjacent Orange County and that in coastal Los Angeles County. The name cantwelli would now apply to the only extant populations of the Pacific pocket mouse, a reassignment with obvious management implications. Our taxonomic decisions also reconfigure the ranges of other subspecies of conservation concern, notably P. l. bangsi Mearns and P. l. brevinasus Osgood.

Author Biography

James L. Patton, Museum of Vertebrate Zoology, University of California.

Professor Emeritus and Curator of Mammals, Department of Integrative Biology and Museum of Vertebrate Zoology

References

ABRAMOFF, M. D., P. J. MAGALHAES, AND S. J. RAM. 2004. Image processing with ImageJ. Biophotonics International 11:36-42.

ALLEN, C. R., D. M. EPPERSON, AND A. S. GARMESTANI. 2004. Red imported fire ant impacts on wildlife: a decade of research. American Midland Naturalist 152:88-103.

ÁLVAREZ-CASTAÑEDA, S. T., W. Z. LIDICKER, JR, AND E. RIOS. 2009. Revision of the Dipodomys merriami complex in the Baja California Peninsula, Mexico. Journal of Mammalogy 90:992-1008.

AMBURGEY, S. M., ET AL. 2021. The influence of species life history and distribution characteristics on species responses to habitat fragmentation in an urban landscape. Journal of Animal Ecology 90:685-697.

BAILEY, V. 1939. The solitary lives of two little pocket mice. Journal of Mammalogy 20:325-328.

BARROWS, C. W., K. D. FLEMING, AND M. F. ALLEN. 2011. Identifying habitat linkages to maintain connectivity for corridor dwellers in a fragmented landscape. Journal of Wildlife Management 75:682-691.

BOND, J. E., ET AL. 2001. Deep molecular divergence in the absence of morphological and ecological change in the Californian coastal dune endemic trapdoor spider Aptostichus simus. Molecular Ecology 10:899-910.

BOOKSTEIN, F. L. 1991. Morphometric tools for landmark data: geometry and biology. Cambridge University Press. New York, U.S.A.

BREHME, C. S., ET AL. 2017. Marine corps base, Camp Pendleton Pacific pocket mouse monitoring results for 2016: 5-year trend analysis and monitoring program evaluation. MCB, Camp Pendleton. DRAFT Prepared for Environmental Security Department, Marine Corps Base, Camp Pendelton, U.S.A.

BREHME, C. S., ET AL. 2021. Dana Point headlands (CNLM, City of Dana Point) Pacific pocket mouse monitoring results for 2020. USGS Cooperator Report to U.S. Fish and Wildlife Service, Carlsbad, U.S.A.

BROOKS, M. L. 1995. Benefits of protective fencing to plant and rodent communities of the western Mojave Desert, California. Environmental Management 19:65-74.

BUISING, A. V. 1990. The Bouse Formation and bracketing units, southeastern California and western Arizona: Implications for the evolution of the proto-Gulf of California and the lower Colorado River. Journal of Geophysical Research 95:20111-20132.

CALIFORNIA NATURAL DIVERSITY DATABASE (CNDDB). July 2022. Special Animals List. California Department of Fish and Wildlife, Sacramento. California, U.S.A.

CERADINI, J. P., AND A. D. CHALFOUN. 2017. Species’ traits help predict small mammal responses to habitat homogenization by an invasive grass. Ecological Applications 27:1451-1465.

CHASE, M. K., ET AL. 2000. Single species as indicators of species richness and composition in California coastal sage scrub birds and small mammals. Conservation Biology 14:474-487.

CHATZIMANOLIS, S., AND M. S. CATERINO. 2008. Phylogeography of the darkling beetle Coelus ciliates in California. Annals Entomological Society of America 101:939-949.

CHOCK, R. Y., ET AL. 2022. Quantitative SWOT analysis: A structured and collaborative approach to reintroduction site selection for the endangered Pacific pocket mouse. Journal for Nature Conservation 70:126268.

COOPER, J. G. 1869. The naturalist in California. American Naturalist 3:182-189.

DAVIS, E. B., ET AL. 2008. The California hotspots project: identifying regions of rapid diversification of mammals. Molecular Ecology 17:120-138.

DUJARDIN, S., AND J.-P. DUJARDIN. 2019. Geometric morphometrics in the cloud. Infection, Genetics, and Evolution, 70:189-196.

DUPIUS, J. R., ET AL. 2020. Genomics confirms surprising ecological divergence and isolation in an endangered butterfly. Biodiversity and Conservation 29:1897-1921.

DURRANT, S. D. 1952. Mammals of Utah, taxonomy and distribution. University of Kansas Publications, Museum of Natural History 6:1-546.

ENGSTROM, W. N. 1996. The California storm of January 1862. Quaternary Research 46:141-148.

GEORGE, J. N., AND R. MATTONI. 2006. Rhaphiomidas terminatus terminatus Cazier, 1985 (Diptera: Mydidae): notes on the rediscovery and conservation biology of a presumed extinct species. The Pan-Pacific Entomologist 82:30-35.

GOLIGHTLY, R. T., ET AL. 1994. Food habits and management of introduced red fox in southern California. Proceedings Vertebrate Pest Conference 16:15-20.

GOTTSCHO, A. D. 2016. Zoogeography of the San Andreas Fault system: Great Pacific Fracture Zones correspond with spatially concordant phylogeographic boundaries in western North America. Biological Review 91:235-254.

GOTTSCHO, A. D., ET AL. 2017. Lineage diversification of fringe-toed lizards (Phrynosomatidae: Uma notata complex) in the Colorado Desert: delimiting species in the presence of gene flow. Molecular Phylogenetics and Evolution 106:103-117.

GRAHAM, M. H., P. K. DAYTON, AND J. M. ERLANDSON. 2003. Ice ages and ecological transitions on temperate coasts. Trends in Ecology and Evolution 18:33-40.

GRINNELL, J. 1913. A distributional list of the mammals of California. Proceedings of the California Academy of Sciences, 4th series, 3:265-390.

GRINNELL, J. 1914. An account of the mammals and birds of the lower Colorado Valley, with special reference to the distributional problems presented. University of California Publications in Zoology 12:51-294.

GRINNELL, J. 1933. Review of the Recent mammal fauna of California. University of California Publications in Zoology 40:71-234.

GRINNELL, J., AND H. S. SWARTH. 1913. An account of the birds and mammals of the San Jacinto area of southern California. University of California Publications in Zoology 10:197-406.

GRISMER, L. L. 1994. The origin and evolution of the peninsular herpetofauna of Baja California, Mexico. Herpetological Natural History 2:51-106.

HAFNER, D. J. 2016. Subfamily Perognathinae, Genus Perognathus. Pp. 202-209, in Handbook of mammals of the world, vol. 6, Lagomorphs and Rodents I (Wilson, D. E., T. E. Lacher, Jr., and R. A. Mittermeier, eds.). Lynx Ediciones, Barcelona, Spain.

HALL, E. R. 1941. New heteromyid rodents from Nevada. Proceedings of the Biological Society of Washington 54:55-61.

HALL, E. R. 1946. Mammals of Nevada. University of California Press. Berkeley, U.S.A.

HALL, E. R. 1981. The mammals of North America, vol. 1. John Wiley & Sons. New York, U.S.A.

HITCHCOCK, C. J., ET AL. 2022. Draft Final: Summary of biodiversity surveys at Hansen Dam Recreational Area, 2020-2021. Report to U.S. Army Corps of Engineers, Los Angeles District, Operations Division.

HOFFMEISTER, D. F. 1986. Mammals of Arizona. The University of Arizona Press and The Arizona Game and Fish Department, Arizona, U.S.A.

HUEY, L. M. 1928. A new silky pocket mouse and a new pocket gopher from Lower California, Mexico. Transactions of the San Diego Society of Natural History 5:87-90.

HUEY, L. M. 1939. The silky pocket mice of southern California and northern Lower California, Mexico, with the description of a new race. Transactions of the San Diego Society of Natural History 9:47-54.

IWANOWICZ, D. D., ET AL. 2016. Metabarcoding of fecal samples to determine herbivore diets: a case study of the endangered Pacific pocket mouse. Plos One 11:e0165366.

JOCKUSCH, E. L., ET AL. 2020. Slender salamanders (genus Batrachoseps) reveal Southern California to be a center for diversification, persistence, and introduction of salamander lineages. PeerJ 8: e9599.

KLINGENBERG, C. P. 2011. MorphoJ: an integrated software package for geometric morphometrics. Molecular Ecology Resources 11:353-357.

KOTLER, B. P. 1984. Effects of illumination on the rate of resource harvesting in a community of desert rodents. American Midland Naturalist 111:383-389.

LAAKKONEN, J., R. N. FISHER, AND T. J. CASE. 2001. Effect of land cover, habitat fragmentation and ant colonies on the distribution and abundance of shrews in southern California. Journal of Animal Ecology 70:776-788.

LEACHÉ, A. D., ET AL. 2009. Quantifying ecological, morphological, and genetic variation to delimit species in the coast horned lizard species complex (Phrysonoma). Proceedings of the National Academy of Sciences 106:12418-12423.

LIDICKER, W. Z., JR. 1960. An analysis of infraspecific variation in the kangaroo rat Dipodomys merriami. University of California Publications in Zoology 67:125-218.

LONGCORE, T., C. RICHE, AND L. M. SULLIVAN. 2009. Critical evaluation of claims regarding management of feral cats by trap-neuter-return. Conservation Biology 23:887-894.

LOVICH, J. E., AND D. BAINBRIDGE. 1999. Anthropogenic degradation of the Southern California desert ecosystem and prospects for natural recovery and restoration. Environmental Management 24:309-326.

LOVICH, J. E., AND J. R. ENNEN. 2011. Wildlife conservation and solar energy development in the desert southwest, United States. BioScience 61:982-992.

LOVICH, J. E., AND J. R. ENNEN. 2013. Assessing the state of the knowledge of utility-scale wind energy development and operation on non-volant terrestrial and marine wildlife. Applied Energy 103:52-60.

M’CLOSKEY, R. T. 1972. Temporal changes in populations and species diversity in a California rodent community. Journal of Mammalogy 53:657-676.

MACMILLEN, R. E. 1964. Population ecology, water relations, and social behavior of a southern California semidesert rodent fauna. University of California Publications Zoology 71:1-66.

MATTONI, R. H. T. 1992. The endangered El Segundo blue butterfly. Journal of Research on the Lepidoptera 29:277-304.

MEARNS, E. A. 1898. Descriptions of three new forms of Pocket-mice from the Mexican border of the United States. Bulletin of the American Museum of Natural History 10:299-302.

MESERVE, P. L. 1976. Food relationships of a rodent fauna in a California coastal sage scrub community. Journal of Mammalogy 57:300-319.

MILLER, W. B., ET AL. 2017. Little pocket mouse Perognathus longimembris. Pp. 85-94, in San Diego County Mammal Atlas (Tremor, S., D. Stokes, W. Spencer, J. Diffendorfer, H. Thomas, S. Chivers, and P. Unitt, eds.). Proceedings of the San Diego Society of Natural History. San Diego, U.S.A.

MOSAUER, W. 1932. Adaptive convergence in the sand reptiles of the Sahara and of California: A study of structure and behavior. Copeia 1932:72-78.

MULCAHY, D. G., ET AL. 2006. Phylogeography of the flat-tailed horned lizard (Phrynosoma mcallii) and the systematics of the P. mcallii-platyrhinos mtDNA complex. Molecular Ecology 15:1807-1826.

OSGOOD, W. H. 1900. Revision of the pocket mice of the genus Perognathus. North American Fauna 18:9-65.

OSGOOD, W. H. 1918. The status of Perognathus longimembris Coues. Proceedings of the Biological Society of Washington 31:95-96.

PARHAM, J. F., AND T. J. PAPENFUSS. 2009. High genetic diversity among fossorial lizard populations (Anniella pulchra) in a rapidly developing landscape (Central California). Conservation Genetics 10:169-176.

PATTON, J. L. 2005. Family Heteromyidae. Pp. 844-858, in Mammal species of the world. A taxonomic and geographic reference (Wilson, D. E., and D. E. Reeder, eds.). The Johns Hopkins University Press. Baltimore, U.S.A.

RIDDLE, B. R., ET AL. 2000. Cryptic vicariance in the historical assembly of a Baja California Peninsular Desert biota. Proceedings of the National Academy of Sciences (USA) 97:14438-14443.

RIDDLE, B. R., ET AL. 2014. Cryptic divergence and revised species taxonomy within the Great Basin pocket mouse, Perognathus parvus (Peale, 1848), species group. Journal of Mammalogy 95:9-25.

RUBINOFF, D., ET AL. 2020. Phylogenomics reveals conservation challenges and opportunities for cryptic endangered species in a rapidly disappearing desert ecosystem. Biodiversity and Conservation 29:2185-2200.

SAFRAN, S. M., ET AL. 2017. Tijuana River Valley historical ecology investigation. Prepared for the state coastal conservancy. San Francisco Estuary Institute-Aquatic Science Center, Richmond. California, U.S.A.

SCHNEIDER, C. A., W. S. RASBAND, AND K. W. ELICEIRI. 2012. NIH Image to ImageJ: 25 years of image analysis. Nature Methods 9:671-675.

STEPHENS, F. 1900. Descriptions of two new mammals from southern California. Proceedings of the Biological Society of Washington 13:153-158.

SWEI, A., ET AL. 2003. Hierarchical genetic structure in fragmented populations of the Little Pocket Mouse (Perognathus longimembris) in Southern California. Conservation Genetics 4:510-514.

TINKHAM, E. R. 1968. Studies in Nearctic desert sand dune Orthoptera, Part XI. A new arenicolous species of Stenopelmatus from Coachella Valley with key and biological notes. Great Basin Naturalist 28:124-131.

USFWS. 1998. Recovery plan for the Pacific pocket mouse (Perognathus longimembris pacificus). U.S. Fish and Wildlife Service. Portland, U.S.A.

USFWS. 2010. Pacific pocket mouse (Perognathus longimembris pacificus) 5-Year Review: Summary and Evaluation. Carlsbad Fish and Wildlife Office. Carlsbad, U.S.A.

VANDERGAST, A. G., ET AL. 2008. Are hotspots of evolutionary potential adequately protected in southern California? Biological Conservation 141:1648-1664.

VON BLOEKER, J. C., JR. 1931a. Perognathus pacificus from the type locality. Journal of Mammalogy 12:369-372.

VON BLOEKER, J. C., JR. 1931b. Extension of range of Perognathus pacificus. Journal of Mammalogy 12:431-432.

VON BLOEKER, J. C., JR. 1932. A new race of Perognathus longimembris from southern California. Proceedings of the Biological Society of Washington 45:127-130.

WILDER. A. P., ET AL. 2022. A chromosome-length reference genome for the endangered Pacific pocket mouse reveals recent inbreeding in a historically large population. Genome Biology and Evolution https://doi.org/10.1093/gbe/evac122.

WILLIAMS, D. F., H. H. GENOWAYS, AND J. K. BRAUN. 1993. Taxonomy. Pp. 38-196 in Biology of the Heteromyidae (Genoways, H. H., and J. H. Brown, eds.). Special Publication No. 10, American Society of Mammalogists. Lawrence, U.S.A.

WOOD, D. A., ET AL. 2008. Molecular and phenotypic diversity in Chionactis occipitalis (Western shovel-nosed snake), with emphasis on the status of C. o. klauberi (Tucson shovel-nosed snake). Conservation Genetics 9:1489-1507.

WOOD, D. A., ET AL. 2013. Comparative phylogeography reveals deep lineages and regional evolutionary hotspots in the Mojave and Sonoran Deserts. Diversity and Distributions 19:722-737.

WOOD, D. A., R. N. FISHER, AND A. G. VANDERGAST. 2014. Fuzzy boundaries: color and gene flow patterns among parapatric lineages of the western shovel-nosed snake and taxonomic implication. Plos One 9:e97494.

Downloads

Published

2023-01-27

Issue

Section

Special Contribution