Molecular data suggest that Heteromys irroratus bulleri should be recognized as a species-level taxon

Authors

  • Maria A. Gutiérrez-Costa Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos.
  • Francisco X. González-Cózatl Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos.
  • María Magdalena Ramírez-Martínez Centro Universitario de la Costa Sur, Universidad de Guadalajara.
  • Luis Ignacio Iñiguez-Dávalos Centro Universitario de la Costa Sur, Universidad de Guadalajara.
  • Duke S. Rogers Monte L. Bean Life Science Museum and Department of Biology, Brigham Young University.

Keywords:

Cytochrome b, genetic divergence, Mexican spiny pocket mouse, phylogeny, valid species

Abstract

Recent collecting surveys in the Sierra de Manantlán Biosphere Reserve, Jalisco (México), uncovered the existence of a new population of the Mexican spiny pocket mouse, Heteromys irroratus. Because the subspecies H. i. bulleri and H. i. jaliscensis occur nearby, our objective was to properly determine the taxonomic identity of the novel sample. Also, we evaluate its distinctiveness, both in terms of genetic divergence and phylogenetic placement, relative to other members of H. irroratus. Preliminary, we compared external and cranial measurements of recently collected individuals to those reported for representatives of the subspecies of H. irroratus occurring close by. In addition, we examined levels of genetic differentiation and phylogenetic relationships, based on sequence data of the Cytochrome b, among this population and other members of H. irroratus, including an individual from Sierra de Juanacatlán, Jalisco, the type locality of H. i. bulleri. Phylogenetic relationships were estimated using Maximum Likelihood and Bayesian Inference methods and levels of genetic divergence were assessed employing Kimura-2-parameters genetic distances. Samples from Sierra de Manantlán and Sierra de Juanacatlán were grouped together in a well-supported haplogroup and genetic distances between them were lower than < 1.02 %. Our phylogenetic hypothesis shows that H. i. bulleri represents the sister group to all other samples of H. irroratus but that, genetically, is a very divergent lineage. Distances values between H. i. bulleri to any of the other groups were > 10.05 %. Comparison of external and cranial measurements showed that, in average, individuals from Sierra de Manantlán are larger than those of H. i. jaliscensis, but more similar in size to H. i. bulleri. Our results show that the new population of the Mexican spiny pocket mouse from Sierra de Manantlán belongs to H. i. bulleri. In addition, the phylogenetic separation and the high levels of genetic divergence of H. i. bulleri, relative to other members of H. irroratus, suggest that the first should be recognized as a species-level taxon. Considering the scarce collecting records of H. i. bulleri and the known area of occurrence, that is very restricted, this taxon may warrant special conservation status.

Author Biography

Maria A. Gutiérrez-Costa, Centro de Investigación en Biodiversidad y Conservación, Universidad Autónoma del Estado de Morelos.

Centro de Investigación en Biodiversidad y Conservación

References

ARELLANO, E., F. X. GONZÁLEZ-COZÁTL, AND D. S. ROGERS. 2005. Molecular systematics of the Middle American harvest mice Reithrodontomys (Muridae), estimated from mitochondrial cytochrome b gene sequences. Molecular Phylogenetics and Evolution 37:529-540.

BAKER, R. J., AND R. D. BRADLEY. 2006. Speciation in mammals and the genetic species concept. Journal of Mammalogy 87:643-662.

BRADLEY, R. D., AND R. J. BAKER. 2001. A test of the genetic species concept: Cytochrome-b sequences and mammals. Journal of Mammalogy 82:960-973.

DARRIBA, D., G. L. TABOADA, R. DOALLO, AND D. POSADA. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772.

DOWLER, R. C., AND H. H. GENOWAYS. 1978. Liomys irroratus. Mammalian Species 82:1-6.

FETZNER, J. W., JR. 1999. Extracting high quality DNA from shed reptile skins: a simpliï¬ed method. Biotechniques 26:1052-1054.

GENOWAYS, H. H. 1973. Systematics and evolutionary relationships of spiny pocket mice, genus Liomys. Special Publications The Museum Texas Tech University 5:1-368.

GOLDMAN, E. A. 1911. Revision of the spiny pocket mice (genera Heteromys and Liomys). North American Fauna 34:1-70.

HALL, T. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41:95-98.

HOANG, D. T., O. CHERNOMOR, A. VON HAESELER, B. Q. MINH, AND L. S. VINH. 2018. UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35:518-522.

KALYAANAMOORTHY, S., B. Q. MINH, T. K. F. WONG, A. VON HAESELER, AND L. S. JERMIIN. 2017. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nature Methods 14:587-589.

KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.

KUMAR, S., G. STECHER, AND K. TAMURA. 2016. MEGA7: Molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870-1874.

NGUYEN, L. T., H. A. SCHMIDT, A. VON HAESELER, AND B. Q. MINH. 2015. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution 32:268-274.

ROGERS, D. S., AND V. L. VANCE. 2005. Phylogenetic relationships among spiny pocket mice (Liomys: Family Heteromyidae): Analysis of cytochrome b based on multiple heuristic approaches. Journal of Mammalogy 86:1085-1094.

RONQUIST, F., M. TESLENKO, P. VAN DER MARK, D. L. AYRES, A. DARLING, S. HÖHNA, B. LARGET, L. LIU, M. A. SUCHARD, AND J. P. HUELSENBECK. 2012. MRBAYES 3.2: Efficient Bayesian phylogenetic inference and model selection across a large model space. Systematic Biology 61:539-542.

SIKES, R. S., AND THE ANIMAL CARE AND USE COMMITTEE OF THE AMERICAN SOCIETY OF MAMMALOGISTS. 2016 Guidelines of the American Society of Mammalogists for the use of wild mammals in research and education. Journal of Mammalogy 97:663-688.

SMITH, M., AND J. PATTON. 1993. The diversiï¬cation of South American murid rodents: evidence from mitochondrial DNA sequence data for the akodontine tribe. Biological Journal of the Linnaean Society 50:149-177.

STATSOFT, INC. 2007. STATISTICA (data analysis software system). version 8.0. www.statsoft.com.

TAMURA, K., AND M. NEI. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512-526.

THOMAS, O. 1893. Description of two new “pocket-mice†of the genus Heteromys. The Annals and Magazine of Natural History 11:329-332.

Downloads

Published

2021-01-22

Issue

Section

Articles