THERYA NOTES 2024, Vol. 5 : 103-111 DOI: 10.12933/therya_notes-24-157 ISSN 2954-3614

SARS-CoV-2 and mammals: A short revision

SARS-CoV-2 y mamíferos: una breve revisión

Eugenia Corrales-Aguilar1*, and Tatiana Murillo1

1 Sección de Virología y Centro de Investigación en Enfermedades Tropicales, Facultad de Microbiología, Universidad de Costa Rica. C. P. 1150-2060, Ciudad Universitaria Rodrigo Facio. San José, Costa Rica. E-mail: eugenia.corrales@ucr.ac.cr (EC-A); tatiana.murillocorrales@ucr.ac.cr (TM).

*Corresponding author

In 2019, an outbreak of pneumonia of unknown origin was reported in China, reminiscent of the Severe Acute Respiratory Syndrome (SARS) virus outbreak during the years 2002-2003. In February 2020, the new virus was identified as a member of the Coronaviridae (CoV) family, initially named nCOV-19 and associated with the disease called COVID-19. It was later renamed SARS-CoV-2 by the international committee on taxonomy of viruses (ICTV), as it shares similarities with 6 previously known and described human coronaviruses, including SARS-CoV and MERS-CoV. Bats, reservoirs of many coronaviruses, were the first mammals presumed to be involved in the transmission cycle. The search for the natural reservoir or host of SARS-CoV-2 has focused on bats of the genus Rhinolophus (Asian horseshoe bats). However, as with other coronaviruses, intermediate hosts that have not yet been identified may be necessary for transmission to humans. The purpose of this work was to conduct a review of the current knowledge of the mammalian hosts of SARS-CoV-2 and the clinical manifestations they have presented. In addition, potential reservoirs are explored, and intermediate hosts are proposed. Finally, we list the challenges in identifying these key species in the virus transmission cycle and advocate for a One Health approach to prevent future pandemics.

Key words: Coronaviruses; host; pandemic; reservoirs; virus.

En 2019, se reportó un brote de neumonía de origen desconocido en China, que recordaba al brote por el virus del Severe Acute Respiratory Syndrome (SARS) durante los años 2002-2003. En Febrero de 2020 se identificó al nuevo virus como miembro de la familia Coronaviridae (CoV), nombrado inicialmente como nCOV-19 y asociado con la enfermedad llamada COVID-19. Posteriormente, fue renombrado como SARS-CoV-2 por el comité internacional sobre taxonomía de virus (ICTV por sus siglas en inglés), ya que comparte similitudes con 6 coronavirus humanos conocidos y descritos previamente, incluidos SARS-CoV y MERS-CoV. Los murciélagos, reservorios de muchos coronavirus, fueron los primeros mamíferos implicados en el ciclo de transmisión hacia los humanos. La búsqueda del reservorio natural u hospedero del SARS-CoV-2 se ha centrado en los murciélagos del género Rhinolophus (murciélagos herradura asiáticos). Sin embargo, como ocurre con otros coronavirus, pueden ser necesarios hospederos intermediarios que aún no han sido identificados en la transmisión hacia humanos. El propósito de este trabajo fue realizar una revisión sobre el conocimiento actual de los mamíferos hospederos del SARS-CoV-2 y las manifestaciones clínicas que han presentado. Además, se exploran los reservorios potenciales, y se proponen hospederos intermediarios. Finalmente, se enumeran los desafíos para identificar estas especies claves en el ciclo de transmisión del virus y se aboga por un enfoque de Una Salud para prevenir futuras pandemias.

Palabras clave: Coronavirus; hospedero; pandemia; reservorios; virus.

© 2024 Asociación Mexicana de Mastozoología, www.mastozoologiamexicana.org

In December 2019, a message in the platform X (former Twitter) was published stating an outbreak of pneumonia by an unknown cause in a region of China. In 2002-2003 an outbreak of a novel coronavirus named SARS (acronym for Severe Acute Respiratory Syndrome) was also reported in the same country and caused a pandemic alarm as it expanded to several countries with an usually high mortality rate of almost 10 % (Abdelrahman et al. 2020; Xu et al. 2020). The scientific community was alarmed about the possible reemergence of SARS. Cases seemed similar but with a higher contagious nature and some clinical differences (Guan et al. 2020; Wu et al. 2020; Zhu et al. 2020). In February 2020, the whole genome sequence of a virus found in a clinical sample was published, identifying the virus as a member of the Coronaviridae family (Bloom et al. 2021; Holmes et al. 2021). The novel virus was named novel coronavirus 19 (nCOV-19) and the clinical disease was named by the World Health Organization (WHO) as coronavirus disease 19 (COVID-19; World Health Organization, WHO 2020). However, after analysis performed by the international committee on taxonomy of viruses (ICTV), the virus was renamed SARS-CoV-2, and SARS was renamed SARS-CoV (Holmes et al. 2021).

Coronaviruses are enveloped, positive-stranded RNA viruses that affect respiratory, intestinal, liver, and nervous system of both humans and wild and domestic animals (Cui et al. 2019; Hao et al. 2022). Prior to the emergence of SARS-CoV-2, there were 6 coronaviruses known to infect humans (HCOV: human coronavirus): HCOV-229E, HCOV-NL63, HCOV-OC43, and HCOV-HKU1 causing self-limiting respiratory illnesses and causing respiratory diseases and SARS-CoV and Middle-East Respiratory Syndrome coronavirus (MERS-CoV) causing more severe systemic illnesses with a higher mortality rate (Cui et al. 2019). These viruses are common zoonotic agents meaning they are maintained in nature by animal reservoirs with distinct hosts. Some of them have already described or known intermediary hosts that serve as bridge for human infection while for others the intermediaries are unknown (Figure 1; Plowright et al. 2017; Salata et al. 2019; Rahman et al. 2020). Many of the definitive hosts in nature of these viruses are bats (Lau et al. 2005; Anthony et al. 2017; Olival et al. 2020; Ruiz-Aravena et al. 2022). Bats harbor plenty bat-related coronaviruses (SARSr-Rs-BatCoVs) that might be transmitted indirectly to humans (Lau et al. 2005; Li et al. 2005, 2022; Poon et al. 2005; Delaune et al. 2021). Scientific publications dating back to 2005 (Lau et al. 2005; Li et al. 2005; Poon et al. 2005) have proposed that bat-related coronaviruses have a mutation rate capable of originating a novel virus with a potential for epidemic and pandemic outcomes. Due to this potential, the importance of understanding the interaction of these viruses with bats, but also with other mammals, has been the research focus of coronavirus experts around the world. Initially, as some pangolin coronaviruses present in Malayan pangolins (Manis avania) were thought to be similar in their sequences to SARS-CoV-2, they were proposed as possible reservoirs, though later dismissed (Xiao et al. 2020; Hou et al. 2023). The urge to determine the viral reservoir increased because of the unprecedented pandemic caused by SARS-CoV-2 from 2020 to 2023. Particularly, since many reports arise suggesting the reservoir or host of this virus in nature could be a bat of the Rhinolophus genus or Asian horseshoe bats (Lau et al. 2005; Li et al. 2005, 2022, 2023). Nevertheless, as seen with other coronaviruses (Figure 1), one or more intermediate, so far not yet identified, hosts may be required for transmission to humans.

The purpose of this review is to explore the current knowledge of SARS-CoV-2 infection in various mammals. We will define basic concepts of reservoir, host, and intermediate host. We will enumerate the possible reservoirs, the potential intermediate hosts suggested until December 2023, and the difficulties to name these key species in the transmission cycle of the virus. Finally, we will propose from the perspective of clinical virology, strategies for the prevention of future pandemics where a One Health approach must be followed.

Concepts for understanding viral transmission. Concepts needed to be explained for better understanding of viral transmission include the terms natural reservoir, intermediate host, host, and spillover. A natural reservoir is defined as the animal that maintains that virus in its ecological niche. The reservoir should harbor the virus continuously and for a long term (Haydon et al. 2002). Usually, the virus does not cause disease in them since they control the infection by physiological, immunological, or genetic barriers (Plowright et al. 2017) or for example, may only excrete the virus under stress (Drexler et al. 2010). A host is an animal that maintains the virus, with or without symptoms, and it can transmit it to another animal from the same or a different species. The host allows the virus to fulfill its reproductive cycle and start a new infectious cycle in another host. An intermediate (or amplifier) host plays a critical role in disease emergence by bringing viruses, from animals which would normally have little to no contact, into close contact (Parrish et al. 2008), for example domestic animals can be intermediate hosts between wildlife and humans. Finally, spillover is the spread of a pathogen to a novel host (Plowright et al. 2017).

Coronaviruses and their zoonotic potential. Within the realm of potentially zoonotic viruses, CoVs hold significant importance owing to their propensity for easy transmission via the respiratory or fecal-oral route (Drexler et al. 2010; Wong et al. 2021). This attribute renders them capable of sparking epidemics and increases the likelihood of different host species transmission or spillover events (Drexler et al. 2010; Wong et al. 2021). CoVs boast the largest genome among RNA viruses thus, granting them with a remarkable capacity for mutations and other genome modifications (Lai and Cavanagh 1997; Wang et al. 2006; Bolles et al. 2011). The substantial genetic diversity within CoVs gives rise to the phenomenon known as quasispecies (Lai and Cavanagh 1997; Bolles et al. 2011), where a delicate equilibrium in the mutation rates exists, resulting in the viral population forming a cloud of variants centered around a consensus genetic sequence. This cloud of viral variants continuously expands and contracts in various directions, providing an ample possibility of genome variants that allows the persistence of the virus by increasing the possibility of adaptation to environmental changes with some variants being more frequent than others (Lai and Cavanagh 1997). Genetic variation in coronaviruses facilitates rapid adaptation to novel hosts and ecological niches, alterations in tissue tropism, and even the emergence of new coronavirus variants, lineages, or species (Steiner et al. 2024). Some researchers have predicted that the infection of different wild, peri-domestic, and domesticated animals may present a fertile ground for the emergence of new SARS-CoV-2 variants, as it was suggested with the Omicron variant (Wei et al. 2021; Du et al. 2022). CoVs form a large family of numerous different viruses, and many have been described in mammals, although most coronaviruses have been detected in birds and a few in reptiles (Salata et al. 2019; Ravelomanantsoa et al. 2020; Ye et al. 2020; Wong et al. 2021). Despite of their high genomic diversity, most coronaviruses have constraints to sustain transmission within human populations because their replication, excretion, and transmission nature have not yet adapted to humans (Woo et al. 2009; Bolles et al. 2011; Wong et al. 2021).

Natural reservoirs and hosts of coronaviruses. The emergence of SARS-CoV in 2002-2003 is attributed to the process of genome recombination with bat SARS-related coronaviruses (SARSr-Rs-BatCoVs; Li et al. 2005, 2020; Lau et al. 2015). This recombined virus initially infected civets (Paguma larvata) in China and subsequently humans before triggering the SARS epidemic. On the other hand, MERS-CoV is believed to have spill overed from different bats species Taphozous perforates (Memish et al. 2013), Neoromicia sp. and Pipistrellus sp. (Ithete et al. 2013), Vespertilio superans (Yang et al. 2014), which have been found positive for related viruses to dromedary camels (Camelus dromedarius) years ago. Later it became prevalent in dromedary camel populations and was detected for the first time in Saudi Arabia in 2012 (Reusken et al. 2013; El-Kafrawy et al. 2019). HCoV-229E and HCoV-NL63 typically induce mild infections in immunocompetent individuals and recent discoveries have uncovered progenitors of these viruses in African bats Triaenops afer and Hipposideros spp. (Pfefferle et al. 2009; Corman et al. 2015; Tao et al. 2017), with camelids such as Vicugna pacos (only in American continent; Crossley et al. 2012) likely serving as intermediate hosts for HCoV-229E. Similarly, HCoV-OC43 and HKU1, which generally cause mild infections in humans, are thought to have originated in rodents, but with HCoV-OC43 having an intermediate host in bovines (Forni et al. 2017; Cui et al. 2023). For SARS-CoV-2 the most likely reservoir in nature has been hypothesized also to be bats (Figure 2). The genome of SARS-CoV-2 has only 79.6 % of identity with SARS-CoV while it bears a striking 96 % similarity to the bat coronavirus RaTG13 (Li et al. 2021; Liu et al. 2021; Pei and Yau 2021). This high level of homology between them suggests that bats might be indeed the natural reservoirs of SARS-CoV-2. Despite this high percentage of homology, the RaTG13 RBD, receptor binding domain needed for cell infection after attachment and determinant for virus tropism, is very divergent from the RBD of the SARS-CoV-2 (Liu et al. 2021; Pei and Yau 2021). Thus, it is possible that the SARS-CoV-2 RBD underwent selective pressure after evolving in horseshoe bats and evolved even further in a putative non-bat intermediate animal species before its spillover to humans. Nevertheless, the exact amino acid identity between SARS-CoV-2 and any other virus found before the pandemic started has yet to be found. SARS-CoV-2 has been detected in many different mammals, though the source of their infection, if it was transmitted by the reservoir (enzootic event) or from another mammal (enzootic event) or from a human being (reverse zoonotic event) has yet to be determined. Because of the numerous transmission and spillover events recorded so far, finding the definite and original host and/or the intermediate host in nature of SARS-CoV-2 remains a difficult task.

Susceptibility of different mammalian species to SARS-CoV-2, modes of transmission and clinical manifestations. Various mammalian species have been confirmed to be positive for SARS-CoV-2, either through natural infection due to the contact with humans or animals infected with the virus, or via experimental infection studies conducted in laboratory environments (Haake et al. 2020; Muñoz-Fontela et al. 2020; Shi et al. 2020; Zhai et al. 2020; Hobbs and Reid 2021; Meekins et al. 2021; Prince et al. 2021; Sharun et al. 2021; Frazzini et al. 2022; Reggiani et al. 2022; Li et al. 2023; Rao et al. 2023; Martínez-Hernández et al. 2024). Mammalian species detected to be positive for SARS-CoV-2 can be grouped in 4 different categories: i. those that underwent experimental infections; ii. those found in the wild; iii. those found in zoos; and iv. those found in domestic settings: farming and in close companion (pets) to humans.

Experimental infections have revealed that SARS-CoV-2 infection poses a risk to various animal species including non-human primates, hamsters, ferrets, American minks, cats, dogs, raccoon dogs, North American deer mice, Egyptian fruit bats, Asian small-clawed otters, and white-tailed deer (Murphy and Ly 2021; Yen et al. 2022; World Organization for Animal Health 2023). Additionally, instances of animal-to-animal transmission have been documented among hamsters, ferrets, cats, minks, raccoon dogs, fruit bats, deer mice, white-tailed deer, rats and mice (Barrs et al. 2020; Freuling et al. 2020; Kim et al. 2020; Richard et al. 2020; Schlottau et al. 2020; Zhai et al. 2020; Dróżdż et al. 2021; Fagre et al. 2021; Lu et al. 2021; Munnink et al. 2021; Shriner et al. 2021; Hale et al. 2022; Yen et al. 2022; Martínez-Hernández et al. 2024). Experimental infections are important to conduct research in pathogenicity, pathology, antivirals, antigenicity, vaccines, and virus susceptibility. On the other hand, natural infections of animals showcase a more interesting panorama with differences in susceptibility to virus infection, clinical presentation (Table 1) and putative transmission routes (infection and excretion of the virus; Munir et al. 2020; Meekins et al. 2021; Fang et al. 2024). The finding of naturally infected animals might contribute to identify the natural host or reservoir in nature of the virus and the putative intermediary host (if there is one or several) serving as bridge for the spillover event(s) to humans. It is tempting to speculate that, since a considerable amount of time has elapsed and so many spillover, zoonotic and reverse zoonotic events have taken place since the emergence of the virus, pin-pointing the culprits might be cumbersome. Furthermore, some press releases have confirmed that other mammals have been found positive in diverse zoos located in different countries. Among them a lynx, hyenas, a coati, a snow leopard, a binturong and 2 hippopotamuses have tested RT-PCR positive for the virus (National Center for Immunization and Respiratory Diseases, Division of Viral Diseases 2022). This emphasizes the need for effective biosecurity measures and surveillance strategies to prevent and control SARS-CoV-2 infections and reverse zoonotic events in zoological institutions (Nederlof et al. 2024).

In many instances, the transmission of SARS-CoV-2 to animals is believed to primarily happen via direct contact with infected asymptomatic humans (Fang et al. 2024). Research conducted in laboratories has demonstrated that the virus can also spread to animals through airborne droplets. Cats, for example, are vulnerable to contracting the virus through airborne exposure, and infected cats may pass it on to other cats they live with through respiratory droplets or airborne pathways (Shi et al. 2020). However, there is so far no indication of transmission occurring through fecal-oral, blood, vertical, or alternative routes between humans and animals (Fang et al. 2024). Many of the infected animals are asymptomatic, but contagious, and may function as a source of transmission at the human–animal interface (Halfmann et al. 2020). Another potential route for transmission of SARS-CoV-2 to animals, though challenging to be addressed, is through contact with contaminated surfaces and objects, since the virus can maintain its infectiousness on them under certain conditions (Aboubakr et al. 2021). The determination of the host range for SARS-CoV-2 and many other coronaviruses primarily pivots on the interaction between the viral S glycoprotein, particularly the spike 1 subunit (S1), and the cellular receptor known as angiotensin-converting enzyme II (ACE2; Luan et al. 2020; Rangel et al. 2020; Zhai et al. 2020; Steiner et al. 2024). Nevertheless, other mammal receptors or coreceptors might function as alternative virus receptors needed for infection. In silico prediction models analyzing the molecular structure of SARS-CoV-2 receptor and mammal protein ACE2 and their interaction, suggest that it is highly likely for humans, primates, deer, rodents, felids, and ferrets (Damas et al. 2020; Rangel et al. 2020; Piplani et al. 2021) to be infected by this virus. This data was also confirmed doing a comparative in vitro infection analysis of 83 cell cultures derived from 55 mammalian species (Li et al. 2023). Interestingly, horseshoe bats and pangolin ACE2 receptors scored very low for binding the SARS-CoV-2 receptor (Damas et al. 2020). Nevertheless, the possibility to exclude that infection in other species occurs via another cellular receptor beside ACE2 is still pending and the open hypothesis remains if this infection is or will be productive enough to elicit transmission to humans or other mammals.

Public health and future directions. The understanding of the involvement of not only domestic and wild animal species in the spread of SARS-CoV-2 remains still incomplete. Nevertheless, there have been several reported cases of SARS-CoV-2 infection among domestic and wild animals (Table 1; Haake et al. 2020; Muñoz-Fontela et al. 2020; Shi et al. 2020; Zhai et al. 2020; Hobbs and Reid 2021; Meekins et al. 2021; Prince et al. 2021; Sharun et al. 2021; Frazzini et al. 2022; Reggiani et al. 2022; Li et al. 2023; Rao et al. 2023; Martínez-Hernández et al. 2024). This observation is noteworthy, given the millions of human cases and the close interactions between humans, pets, and wildlife under their care (Tan et al. 2022). Nonetheless, the susceptibility of some animals to SARS-CoV-2 infection, along with their potential to shed infectious virus through respiratory secretions and/or feces (McAloose et al. 2020; Newman et al. 2020; Oreshkova et al. 2020), underscores the importance of further research at the intersection of human-animal-environmental dynamics, guided by the principles of One Health (Rubin et al. 2014; Kelly et al. 2017). These principles mainly describe the promotion of a comprehensive approach that addresses health issues by considering all facets of human, animal, and environmental health as an integrated problem-solving framework highlighting the importance of broadening expertise in public health disciplines and interdisciplinary work (Kelly et al. 2017). Particularly, portraying how human behavior and its impact on the environment through globalization, climate change, deforestation, closer contact with wildlife, domestication of wild animals and other alterations of nature promote the emergence and reemergence of diseases. The SARS-CoV-2 pandemic has been a clear example of a global problem that needed to be addressed by several and diverse expertise backgrounds to obtain an integrated, definitive response. It was probably a global problem that arose from the mishandling of wild animals by humans, as it is hypothesized that the spillover event of SARS-CoV-2 to humans and the epicenter of the COVID-19 pandemic occurred in a wholesale market in Huanan were animals were kept in stressful conditions (Worobey et al. 2022).

Of note, there is little evidence that pet mammals play a significant role in the spread of SARS-CoV-2 virus to humans even after close contact with aerosols, nasal/lung secretions, or feces (Dróżdż et al. 2021; Yen et al. 2022). Common among the pandemic CoVs and various other novel viruses affecting humans, such as Ebola, Yellow Fever, and Dengue, is their origin in wild animal hosts (Jones et al. 2008; Allen et al. 2017; Plowright et al. 2017; Ruiz-Aravena et al. 2022). Despite an (almost wishful) belief in minimal risk, virologists globally have acknowledged and expressed concerns regarding anthropogenic activities that promote and intensify interactions between humans and wildlife, thereby increasing the risk of zoonotic disease transmission (Allen et al. 2017; Kelly et al. 2017; Olival et al. 2017). The presence of SARS-CoV-2 in animal reservoirs presents an additional obstacle for implementing a suppression/elimination strategy for pandemic mitigation. Instances of back-spill into human populations, as observed in Danish and Dutch mink farms or pet hamsters in Hongkong, appear to be unavoidable, complicating efforts to contain the virus.

From the scope of clinical virology, some mitigation strategies for SARS-CoV-2 and future pandemics could be considered: i) surveillance of identified “hot spots” for potential zoonoses emergence (Carlson et al. 2022), developing broad, efficient, and cost effective methodologies, ii) investment in research and development of antiviral and/or vaccine strategies allowing capacity building for clinical trials, licentiate successful candidates and bring to manufacture, and most importantly, invest in tests to define human and mammals protection against infection or a tests that traduce in predicting severity of disease; iii) reduce drivers of spillover and pathogen dissemination by understanding epidemiology, developing sensitizing and educational campaigns to attempt the respect of wildlife by humans, promoting behavioral changes that diminish biodiversity loss and depletion of ecosystems; iv) develop from an interdisciplinary approach counter mechanisms to misinformation and disinformation and promote science education programs to expand public understanding of complex topics; v) strengthen the joint work of multiple, diverse, and inclusive stakeholders in order to provide effective guidance to policymakers and decision-makers based on evidence and vi) global accessibility to information, testing, treatment and vaccines, included with participation in research and guideline creation, as the exclusion of developing countries limits the efficacy of any control mechanisms facilitating viral and disease persistence, with the particularity that disease emergence hotspots are mostly located in these countries (Erkyihun and Alemayehu 2022; Keusch et al. 2022; Leifels et al. 2022; Lefrançois et al. 2023). Future research in wild animals and surveillance are necessary to understand if and how different mammals could be affected by SARS-CoV-2. The most common aim of some viruses is to attain a point of equilibrium with their host and become endemic without causing high mortality in a susceptible host population, we will have to wait to see if SARs-CoV-2 behaves in this form.

Acknowledgements

We thank our research group and university for their support during this pandemic. Furthermore, funding for research with SARS-CoV-2 was granted by UCREA and UCR Rectoría (VI-C0-344 and VI-C1-015), MICITT (VI-C2-500, #FI-0002-21), and ICGEB (VI-C1-509, #CRP/CRI20-03). We also thank the two anonymous reviewers who helped improve earlier versions of this note.

Literature cited

Abdelrahman, Z., M. Li, and X. Wang. 2020. Comparative review of SARS-CoV-2, SARS-CoV, MERS-CoV, and Influenza a respiratory viruses. Frontiers in Immunology 11:552909.

Aboubakr, H. A., T. A. Sharafeldin, and S. M. Goyal. 2021. Stability of SARS-CoV-2 and other coronaviruses in the environment and on common touch surfaces and the influence of climatic conditions: A review. Transboundary and Emerging Diseases 68:296–312.

Allen, T., et al. 2017. Global hotspots and correlates of emerging zoonotic diseases. Nature Communications 8:1124.

Anthony, S. J., et al. 2017. Further evidence for bats as the evolutionary source of middle east respiratory syndrome coronavirus. mBio 8:e00373-17.

Barrs, V. R., et al. 2020. SARS-CoV-2 in quarantined domestic cats from COVID-19 households or close contacts, Hong Kong, China. Emerging Infectious Diseases 26:3071–3074.

Bloom, J. D., et al. 2021. Investigate the origins of COVID-19. Science 372:694.

Bolles, M., E. Donaldson, and R. Baric. 2011. SARS-CoV and emergent coronaviruses: viral determinants of interspecies transmission. Current Opinion in Virology 1:624–634.

Carlson, C. J., et al. 2022. Climate change increases cross-species viral transmission risk. Nature 607:555–562.

Corman, V. M., et al. 2015. Evidence for an ancestral association of human Coronavirus 229E with bats. Journal of Virology 89:11858–11870.

Crossley, B. M., et al. 2012. Identification and characterization of a novel alpaca respiratory coronavirus most closely related to the human coronavirus 229E. Viruses 4:3689–3700.

Cui, J., F. Li, and Z. L. Shi. 2019. Origin and evolution of pathogenic coronaviruses. Nature Reviews Microbiology 17:181–192.

Cui, X., et al. 2023. Future trajectory of SARS-CoV-2: Constant spillover back and forth between humans and animals. Virus Research 328:199075.

Damas, J., et al. 2020. Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proceedings of the National Academy of Sciences of the United States of America 117:22311–22322.

Delaune, D., et al. 2021. A novel SARS-CoV-2 relates coronavirus in bats from Cambodia. Nature Communications 12:6563.

Drexler, J. F., et al. 2010. Genomic characterization of severe acute respiratory syndrome-related coronavirus in European bats and classification of coronaviruses based on partial RNA-dependent RNA polymerase gene sequences. Journal of Virology 84:11336–11349.

Dróżdż, M., et al. 2021. Current state of knowledge about role of pets in zoonotic transmission of SARS-CoV-2. Viruses 13:1149.

Du, P., G. F. Gao, and Q. Wang. 2022. The mysterious origins of the Omicron variant of SARS-CoV-2. The Innovation 3:100206.

El-Kafrawy, S. A., et al. 2019. Enzootic patterns of Middle East respiratory Syndrome coronavirus in imported African and local Arabian dromedary camels: a prospective genomic study. The Lancet Planetary Health 3:e521–e528.

Erkyihun, G. A., and M. B. Alemayehu. 2022. One Health Approach for the control of zoonotic diseases. Zoonoses 2:963.

Fagre, A., et al. 2021. SARS-CoV-2 infection, neuropathogenesis and transmission among deer mice: Implications for spillback to New World rodents. PLoS Pathogens 17:e1009585.

Fang, R., et al. 2024. SARS-CoV-2 infection in animals: Patterns, transmission routes, and drivers. Eco-Environment & Health 3:45–54.

Forni, D., et al. 2017. Molecular evolution of human coronavirus genomes. Trends in Microbiology 25:35–48.

Frazzini, S., et al. 2022. SARS CoV-2 infections in animals, two years into the pandemic. Archives of Virology 167:2503–2517.

Freuling, C. M., et al. 2020. Susceptibility of Raccoon Dogs for experimental SARS-CoV-2 infection. Emerging Infectious Diseases 26:2982–2985.

Guan, W., et al. 2020. Clinical characteristics of coronavirus Disease 2019 in China. New England Journal of Medicine 382:1708–1720.

Haake, C., et al. 2020. Coronavirus infections in companion animals: Virology, epidemiology, clinical and pathologic features. Viruses 12:1023.

Hale, V. L., et al. 2022. SARS-CoV-2 infection in free-ranging white-tailed deer. Nature 602:481–486.

Halfmann, P. J., et al. 2020. Transmission of SARS-CoV-2 in domestic cats. The New England Journal of Medicine 383:592–594.

Hao, Y. J., et al. 2022. The origins of COVID-19 pandemic: A brief overview. Transboundary and Emerging Diseases 69:3181–3197.

Haydon, D. T., et al. 2002. Identifying reservoirs of infection: a conceptual and practical challenge. Emerging Infectious Diseases 8:1468–1473.

Hobbs, E. C., and T. J. Reid. 2021. Animals and SARS-CoV-2: Species susceptibility and viral transmission in experimental and natural conditions, and the potential implications for community transmission. Transboundary and Emerging Diseases 68:1850–1867.

Holmes, E.C., et al. 2021. The origins of SARS-CoV-2: A critical review. Cell 184:4848–4856.

Hou, Y. J., et al. 2023. Host range, transmissibility and antigenicity of a pangolin coronavirus. Nature Microbiology 8:1820–1833.

Ithete, N. L. et al. 2013. Close relative of human Middle East respiratory syndrome coronavirus in bat, South Africa. Emerging Infectious Diseases 19:1697–1699.

Jones, K. E., et al. 2008. Global trends in emerging infectious diseases. Nature 451:990–993.

Kelly, T. R., et al. 2017. One Health proof of concept: Bringing a transdisciplinary approach to surveillance for zoonotic viruses at the human-wild animal interface. Preventive Veterinary Medicine 137:112.

Keusch, G. T., et al., 2022. Pandemic origins and a One Health approach to preparedness and prevention: Solutions based on SARS-CoV-2 and other RNA viruses. Proceedings of the National Academy of Sciences of the United States of America 119:e2202871119.

Kim, Y., et al. 2020. Infection and rapid transmission of SARS-CoV-2 in ferrets. Cell Host & Microbe 27:704–709.e2.

Lai, M. M., and D. Cavanagh. 1997. The molecular biology of coronaviruses. Advances in Virus Research 48:1–100.

Lau, S. K. P., et al. 2005. Severe Acute Respiratory Syndrome coronavirus-like virus in Chinese horseshoe bats. Proceedings of the National Academy of Sciences of the United States of America 102:14040–14045.

Lau, S. K. P., et al. 2015. Severe Acute Respiratory Syndrome (SARS) coronavirus ORF8 protein is acquired from SARS-related coronavirus from greater horseshoe bats through recombination. Journal of Virology 89:10532–10547.

Lefrançois, T., et al. 2023. After 2 years of the COVID-19 pandemic, translating One Health into action is urgent. The Lancet 401:789–794.

Leifels, M., et al. 2022. The one health perspective to improve environmental surveillance of zoonotic viruses: lessons from COVID-19 and outlook beyond. ISME Communications 2022 2:1–9.

Li, W., et al. 2005. Bats are natural reservoirs of SARS-like coronaviruses. Science 310:676–679.

Li, X., et al. 2020. Emergence of SARS-CoV-2 through recombination and strong purifying selection. Science Advances 6:eabb9153.

Li, P., et al. 2021. The Rhinolophus affinis bat ACE2 and multiple animal orthologs are functional receptors for bat coronavirus RaTG13 and SARS-CoV-2. Science Bulletin 66:1215–1227.

Li, L., et al. 2022. Epidemiology and genomic characterization of two novel SARS-related coronaviruses in horseshoe bats from Guangdong, China. mBio 13:e0046322.

Li, M., et al. 2023. Comparative susceptibility of SARS-CoV-2, SARS-CoV, and MERS-CoV across mammals. The ISME Journal 2023 17:4 17:549–560.

Liu, K., et al. 2021. Binding and molecular basis of the bat coronavirus RaTG13 virus to ACE2 in humans and other species. Cell 184:3438–3451.e10.

Lu, L., et al. 2021. Adaptation, spread and transmission of SARS-CoV-2 in farmed minks and associated humans in the Netherlands. Nature Communications 12:6802.

Luan, J., et al. 2020. Spike protein recognition of mammalian ACE2 predicts the host range and an optimized ACE2 for SARS-CoV-2 infection. Biochemical and Biophysical Research Communications 526:165–169.

Martínez-Hernández, F., et al. 2024. Identification of SARS-CoV-2 in urban rodents from Southern Mexico City at the beginning of the COVID-19 pandemic. Revista do Instituto de Medicina Tropical de São Paulo 66:e8.

McAloose, D., et al. 2020. From people to panthera: Natural sars-cov-2 infection in tigers and lions at the bronx zoo. mBio 11:1–13.

Meekins, D. A., N. N. Gaudreault, and J. A. Richt. 2021. Natural and experimental SARS-CoV-2 infection in domestic and wild animals. Viruses 13:1993.

Memish, Z. A., et al. 2013. Middle East respiratory syndrome coronavirus in bats, Saudi Arabia. Emerging Infectious Diseases 19:1819–1823.

Munir, K., et al. 2020. Zoonotic and reverse zoonotic events of SARS-CoV-2 and their impact on global health. Emerging Microbes & Infections 9:2222–2235.

Munnink, B. B. O., et al. 2021. Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans. Science 371:172–177.

Muñoz-Fontela, C., et al. 2020. Animal models for COVID-19. Nature 586:509–515.

Murphy, H. L., and H. Ly. 2021. Understanding the prevalence of SARS-CoV-2 (COVID-19) exposure in companion, captive, wild, and farmed animals. Virulence 12:2777–2786.

National Center for Immunization and Respiratory Diseases (NCIRD), Division of Viral Diseases, C. 2022. Animals and COVID-19 | CDC. https://www.cdc.gov/coronavirus/2019-ncov/daily-life-coping/animals.html. Accessed on March 5, 2024.

Nederlof, R. A., M. A. de la Garza, and J. Bakker. 2024. Perspectives on SARS-CoV-2 Cases in Zoological Institutions. Veterinary Sciences 11:78.

Newman, A., et al. 2020. First reported cases of SARS-CoV-2 infection in companion animals - New York, March-April 2020. MMWR. Morbidity and Mortality Weekly Report 69:710–713.

Olival, K. J., et al. 2017. Host and viral traits predict zoonotic spillover from mammals. Nature 546:646–650.

Olival, K. J., et al. 2020. Possibility for reverse zoonotic transmission of SARS-CoV-2 to free-ranging wildlife: A case study of bats. PLoS Pathogens 16:e1008758.

Oreshkova, N., et al. 2020. SARS-CoV-2 infection in farmed minks, the Netherlands, April and May 2020. Eurosurveillance 25:2001005.

Parrish, C. R., et al. 2008. Cross-species virus transmission and the emergence of new epidemic diseases. Microbiology and Molecular Biology Reviews: MMBR 72:457–470.

Pei, S., and S. S. T. Yau. 2021. Analysis of the genomic distance between bat coronavirus RaTG13 and SARS-CoV-2 reveals multiple origins of COVID-19. Acta Mathematica Scientia 41:1017–1022.

Pekar, J. E., et al. 2022. The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2. Science (New York, N.Y.) 377:960–966.

Pfefferle, S., et al. 2009. Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana. Emerging Infectious Diseases 15:1377–1384.

Piplani, S., et al. 2021. In silico comparison of SARS-CoV-2 spike protein-ACE2 binding affinities across species and implications for virus origin. Scientific Reports 11:13063.

Plowright, R. K., et al. 2017. Pathways to zoonotic spillover. Nature Reviews Microbiology 15:502–510.

Poon, L. L. M., et al. 2005. Identification of a novel coronavirus in bats. Journal of Virology 79:2001–2009.

Prince, T., et al. 2021. Sars-Cov-2 infections in animals: Reservoirs for reverse zoonosis and models for study. Viruses 13:494.

Rahman, M. T., et al. 2020. Zoonotic diseases: etiology, impact, and control. Microorganisms 8:1–34.

Rangel, H. R., et al. 2020. SARS-CoV-2 host tropism: An in silico analysis of the main cellular factors. Virus Research 289:198154.

Rao, S. S., et al. 2023. Susceptibility of SARS Coronavirus-2 infection in domestic and wild animals: a systematic review. 3 Biotech 13:5.

Ravelomanantsoa, N. A. F., et al. 2020. The zoonotic potential of bat-borne coronaviruses. Emerging Topics in Life Sciences 4:365–381.

Reggiani, A., G. Rugna, and P. Bonilauri. 2022. SARS-CoV-2 and animals, a long story that doesn´t end now: What we need to learn from the emergence of the Omicron variant. Veterinary Science 9:1085613.

Reusken, C. B., et al. 2013. Middle East respiratory syndrome coronavirus neutralising serum antibodies in dromedary camels: a comparative serological study. The Lancet Infectious Diseases 13:859-866.

Richard, M., et al. 2020. SARS-CoV-2 is transmitted via contact and via the air between ferrets. Nature Communications 11:3496.

Rubin, C., B. Dunham, and J. Sleeman. 2014. Making One Health a reality—crossing bureaucratic boundaries. Microbiology Spectrum 2:OH-0016-2012.

Ruiz-Aravena, M., et al. 2022. Ecology, evolution, and spillover of coronaviruses from bats. Nature Reviews Microbiology 20:299–314.

Salata, C., et al. 2019. Coronaviruses: a paradigm of new emerging zoonotic diseases. Pathogens and disease 77:ftaa006.

Schlottau, K., et al. 2020. SARS-CoV-2 in fruit bats, ferrets, pigs, and chickens: an experimental transmission study. The Lancet. Microbe 1:e218–e225.

Sharun, K., et al. 2021. SARS-CoV-2 in animals: potential for unknown reservoir hosts and public health implications. Veterinary Quarterly 41:181–201.

Shi, J., et al. 2020. Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS-coronavirus 2. Science (New York, N.Y.) 368:1016–1020.

Shriner, S.A., et al. 2021. SARS-CoV-2 exposure in escaped mink, Utah, USA. Emerging Infectious Diseases 27:988–990.

Steiner, S., et al. 2024. SARS-CoV-2 biology and host interactions. Nature Reviews Microbiology 2024:1–20.

Tan, C. C. S., et al. 2022. Transmission of SARS-CoV-2 from humans to animals and potential host adaptation. Nature Communications 13:2988.

Tao, Y., et al. 2017. Surveillance of bat coronaviruses in Kenya identifies relatives of human coronaviruses NL63 and 229E and their recombination history. Journal of Virology 91:e01953-16.

Wang, L. F., et al. 2006. Review of bats and SARS. Emerging Infectious Diseases 12:1834–1840.

Wei, C., et al. 2021. Evidence for a mouse origin of the SARS-CoV-2 Omicron variant. Journal of Genetics and Genomics 48:1111–1121.

Wong, A. C. P., S. K. P. Lau, and P. C. Y. Woo. 2021. Interspecies jumping of bat coronaviruses. Viruses 13:2188.

Woo, P. C. Y., et al. 2009. Coronavirus diversity, phylogeny and interspecies jumping. Experimental Biology and Medicine 234:1117–1127.

World Health Organization (WHO). 2020. Naming the coronavirus disease (COVID-19) and the virus that causes it. Available at https://www.who.int/emergencies/diseases/novel-coronavirus-2019/technical-guidance/naming-the-coronavirus-disease-(covid-2019)-and-the-virus-that-causes-it. Accessed on May 16, 2024.

World Organization for Animal Health. 2023. SARS CoV-2 in animals – situation report 22. https://www.woah.org/en/document/sars-cov-2-in-animals-situation-report-22/. Accessed on March 5, 2024.

Worobey, M., et al. 2022. The Huanan Seafood Wholesale Market in Wuhan was the early epicenter of the COVID-19 pandemic. Science 377:951-959.

Wu, F., et al. 2020. A new coronavirus associated with human respiratory disease in China. Nature 579:265–269.

Xiao, K., et al. 2020. Isolation of SARS-CoV-2-related coronavirus from Malayan pangolins. Nature 583:286–289.

Xu, J., et al. 2020. Systematic comparison of two animal-to-human transmitted human coronaviruses: SARS-CoV-2 and SARS-CoV. Viruses 12:244.

Yang, L., et al. 2014. MERS–related Betacoronavirus in Vespertilio superans bats, China. Emerging Infectious Diseases 20:1260-1262.

Ye, Z.W., et al. 2020. Zoonotic origins of human coronaviruses. International Journal of Biological Sciences 16:1686–1697.

Yen, H. L., et al. 2022. Transmission of SARS-CoV-2 delta variant (AY.127) from pet hamsters to humans, leading to onward human-to-human transmission: a case study. Lancet (London, England) 399:1070-1078.

Zhai, X., et al. 2020. Comparison of Severe Acute Respiratory Syndrome coronavirus 2 spike protein binding to ACE2 receptors from human, pets, farm animals, and putative intermediate hosts. Journal of Virology 94:e00831-20.

Zhu, N., et al. 2020. A novel coronavirus from patients with pneumonia in China, 2019. New England Journal of Medicine 382:727–733.

Associated editor: Itandehui Hernández Aguilar.

Submitted: March 7, 2024; Reviewed: May 18, 2024.

Accepted: May 21, 2024; Published on line: May 31, 2024.

Figure 1. Animal origins of human coronaviruses. Adapted from Cui et al. (2019). The depiction uses solid arrows for confirmed data, gray broken arrows for mild infection, and black broken arrows for severe infection.

Figure 2. Probable zoonotic transmission of SARS-CoV-2 and adaptation to humans. Adapted from Pekar et al. (2022).

Table 1. Mammals described as positive for SARS-CoV-2 in a non-experimental setting. Adapted from Munir et al. (2020), Meekins et al. (2021), and Fang et al. (2024).

Mammal

common name and scientific name

Clinical signs

Transmission to humans

Domestic cat,

Felis catus

Subclinical in most studies (adult/subadult), behavior changes, diarrhea, weight loss in one study; potential severe clinical signs in juveniles

Yes, via direct contact; indirect (aerosol) transmission less likely

Domestic dog,

Canis familiaris

Subclinical

None reported; dogs may shed virus in nasal secretions

Ferret,

Mustela putorius furo

Most subclinical; isolated increased body temperature, reduced activity, respiratory signs, reduced activity/appetite, ruffled fur

Yes, via direct contact; indirect (aerosol), transmission less effective

American mink,

Neovison vison

Many asymptomatic; nasal discharge, respiratory distress, reduced activity/feed intake, mortality

Widespread infection in farms; natural infection from mink to humans, cats, and dogs via indirect (aerosol) transmission

Asian Small-clawed otter,

Aonyx cinereus

Respiratory signs, lethargy

Yes, via direct contact

White-tailed deer,

Odocoileus virginianus

Most subclinical; elevated body temperature; some ocular/nasal discharge

Yes, via direct and indirect (aerosol) contact

Western lowland gorilla,

Gorilla gorilla

Respiratory signs

Yes, via direct contact

Syrian or Golden hamsters, Mesocricetus auratus

No evidence of overt illness

Hamster to hamster, hamster to human, via direct and indirect (aerosols) contact. Resulted in further human to human infections

Racoon dogs,

Nyctereutes procyonoides

Asymptomatic

Possible direct contact between humans and experimentally infected animals

Lions / Tigers

Panthera tigris jacksoni, Panthera tigris altaica, Panthera leo krugeri

Cough and wheezing with subsequent inappetence, virus associated tissue damage

Probable direct or indirect transmission from humans to lions/tigers and from tigers/lions to tigers/lions

Rats/ mice

Rattus norvegicus

Mus musculus

No evidence of overt illness, since weight was not affected

Probable direct or indirect transmission from humans